中国科学技术大学学报 ›› 2010, Vol. 40 ›› Issue (4): 353-357.DOI: 10.3969/j.issn.0253-2778.2010.04.004

• 原创论文 • 上一篇    下一篇

分子动力学模拟碳纳米管与蛋白质中 功能基团的相互作用

杨鹏军   

  1. 中国科学技术大学高分子科学与工程系,安徽合肥 230026
  • 收稿日期:2009-11-17 修回日期:2010-01-08 出版日期:2010-04-30 发布日期:2010-04-30
  • 通讯作者: 金邦坤
  • 作者简介:杨鹏军,男,1984年生,硕士生. 研究方向:分子模拟. E-mail:ypj@mail.ustc.edu.cn

Molecular dynamic simulation of interactions between SWNTs and functional groups of proteins

YANG Pengjun   

  1. Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei 230026, China
  • Received:2009-11-17 Revised:2010-01-08 Online:2010-04-30 Published:2010-04-30

摘要: 采用分子动力学方法模拟了水溶液中单壁碳纳米管(single-walled carbon nanotubes,SWNTs)与由蛋白质中功能基团功能化的自组装单层膜(self-assembled monolayers,SAMs)的相互作用.研究结果显示由于水分子的溶剂化效应,单壁碳纳米管(SWNTs)与带电荷的SAMs相互作用能量为零.SWNTs与不带电荷的SAMs可以相互吸附,而影响二者吸附的因素中范德华作用占主导地位.同时通过质心距离分析也证明了功能化基团的种类及电离状态对SAMs与SWNTs的相互作用存在影响,并验证了蛋白质原子和SWNTs的有效相互作用距离.

关键词: 单壁碳纳米管, 自组装单层膜, 功能基团, 吸附, 分子动力学模拟

Abstract: The interactions between SWNTs (single-walled carbon nanotubes) and functionalized SAMs (self-assembled monolayers) in aqueous solution were simulated through the molecular dynamic method. The SAMs were functionalized by the functional groups of proteins. The simulation results showed that the interaction energy between SWNTs and the charged SAMs are zero because of the solvent effect of water molecules. The SWNTs have affinity with the uncharged SAMs, while the van der Waals interaction gives the dominant effect to the interaction energy. The analysis of the distance of the mass center also proved that the types and ionization states of the functional groups had a strong influence on the interactions between SWNTs and SAMs. The effective interaction distance between atoms of proteins and SWNTs was also validated.

Key words: single-walled carbon nanotubes, self-assembled monolayers, functional groups, adsorption, molecular dynamic simulation